HL_8T3D_012

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UGCCUCGGUA

Length

10 nucleotides

Bulged bases

8T3D|1|A1|C|543, 8T3D|1|A1|C|544, 8T3D|1|A1|U|545, 8T3D|1|A1|C|546, 8T3D|1|A1|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_012 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2579

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8T3D|1|A1|U|541
8T3D|1|A1|G|542
8T3D|1|A1|C|543
8T3D|1|A1|C|544
8T3D|1|A1|U|545
8T3D|1|A1|C|546
8T3D|1|A1|G|547
8T3D|1|A1|G|548
8T3D|1|A1|U|549
8T3D|1|A1|A|550

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AS

60S ribosomal protein L20