HL_8T3D_024

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8T3D|1|A1|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_024 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.0639

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8T3D|1|A1|G|1126
8T3D|1|A1|G|1127
8T3D|1|A1|U|1128
8T3D|1|A1|A|1129
8T3D|1|A1|A|1130
8T3D|1|A1|G|1131
8T3D|1|A1|C|1132

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

60S ribosomal protein L10