HL_8T3D_034
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GUUAAGAUUC
- Length
- 10 nucleotides
- Bulged bases
- 8T3D|1|A1|U|1606, 8T3D|1|A1|U|1607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3D_034 not in the Motif Atlas
- Homologous match to HL_8C3A_035
- Geometric discrepancy: 0.1047
- The information below is about HL_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8T3D|1|A1|G|1599
8T3D|1|A1|U|1600
8T3D|1|A1|U|1601
8T3D|1|A1|A|1602
8T3D|1|A1|A|1603
8T3D|1|A1|G|1604
8T3D|1|A1|A|1605
8T3D|1|A1|U|1606
8T3D|1|A1|U|1607
8T3D|1|A1|C|1608
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
- Chain AX
- 60S ribosomal protein L25
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Al
- 60S ribosomal protein L39
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