HL_8T3D_052

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8T3D|1|A1|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_052 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1081

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8T3D|1|A1|C|2616
8T3D|1|A1|U|2617
8T3D|1|A1|G|2618
8T3D|1|A1|G|2619
8T3D|1|A1|G|2620
8T3D|1|A1|G|2621
8T3D|1|A1|C|2622
8T3D|1|A1|G|2623
8T3D|1|A1|G|2624

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain Ab

RPL29 isoform 1