HL_8T3D_054

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_054 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2211

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8T3D|1|A1|A|2673
8T3D|1|A1|A|2674
8T3D|1|A1|C|2675
8T3D|1|A1|A|2676
8T3D|1|A1|G|2677
8T3D|1|A1|A|2678
8T3D|1|A1|A|2679
8T3D|1|A1|A|2680
8T3D|1|A1|U|2681

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AJ

RPL11A isoform 1

Chain BP

RPS15 isoform 1