HL_8T3D_065
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 8T3D|1|A1|G|3116, 8T3D|1|A1|C|3120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3D_065 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.0735
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
8T3D|1|A1|C|3110
8T3D|1|A1|U|3111
8T3D|1|A1|G|3112
8T3D|1|A1|A|3113
8T3D|1|A1|A|3114
8T3D|1|A1|C|3115
8T3D|1|A1|G|3116
8T3D|1|A1|C|3117
8T3D|1|A1|C|3118
8T3D|1|A1|U|3119
8T3D|1|A1|C|3120
8T3D|1|A1|U|3121
8T3D|1|A1|A|3122
8T3D|1|A1|A|3123
8T3D|1|A1|G|3124
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AH
- 60S ribosomal protein L9-A
- Chain AO
- 60S ribosomal protein L16-A
- Chain Am
- Ubiquitin-60S ribosomal protein L40
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