HL_8T3D_071

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGUGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_071 not in the Motif Atlas

Homologous match to HL_8C3A_074

Geometric discrepancy: 0.1072

The information below is about HL_8C3A_074

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8T3D|1|A3|G|88
8T3D|1|A3|G|89
8T3D|1|A3|U|90
8T3D|1|A3|G|91
8T3D|1|A3|A|92
8T3D|1|A3|C|93

Current chains

Chain A3

5s rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AI

60S ribosomal protein L10

Chain AS

60S ribosomal protein L20