HL_8T3D_076

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_076 not in the Motif Atlas

Homologous match to HL_8C3A_192

Geometric discrepancy: 0.0937

The information below is about HL_8C3A_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.3

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8T3D|1|B5|G|7
8T3D|1|B5|U|8
8T3D|1|B5|U|9
8T3D|1|B5|G|10
8T3D|1|B5|A|11
8T3D|1|B5|U|12
8T3D|1|B5|C|13
8T3D|1|B5|C|14
8T3D|1|B5|U|15
8T3D|1|B5|G|16
8T3D|1|B5|C|17

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BC

RPS2 isoform 1

Chain BX

40S ribosomal protein S23-A