HL_8T3D_080

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8T3D|1|B5|U|231, 8T3D|1|B5|G|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_080 not in the Motif Atlas

Geometric match to HL_4WF9_037

Geometric discrepancy: 0.2833

The information below is about HL_4WF9_037

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8T3D|1|B5|C|230
8T3D|1|B5|U|231
8T3D|1|B5|U|232
8T3D|1|B5|C|233
8T3D|1|B5|G|234
8T3D|1|B5|G|235

Current chains

Chain B5

18S rRNA

Nearby chains