3D structure

PDB id
8T3D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.95 Å

Loop

Sequence
UAAUUCA
Length
7 nucleotides
Bulged bases
8T3D|1|B5|A|452
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T3D_087 not in the Motif Atlas
Homologous match to HL_8P9A_201
Geometric discrepancy: 0.2731
The information below is about HL_8P9A_201
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_48417.6
Basepair signature
cWW-F-F
Number of instances in this motif group
22

Unit IDs

8T3D|1|B5|U|450
8T3D|1|B5|A|451
8T3D|1|B5|A|452
8T3D|1|B5|U|453
8T3D|1|B5|U|454
8T3D|1|B5|C|455
8T3D|1|B5|A|456

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BE
40S ribosomal protein S4-A
Chain BY
40S ribosomal protein S24-A

Coloring options:


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