HL_8T3D_088

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CCAUUCGG

Length

8 nucleotides

Bulged bases

8T3D|1|B5|C|491, 8T3D|1|B5|A|492, 8T3D|1|B5|U|494, 8T3D|1|B5|C|495, 8T3D|1|B5|G|496

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3D|1|B5|C|490
8T3D|1|B5|C|491
8T3D|1|B5|A|492
8T3D|1|B5|U|493
8T3D|1|B5|U|494
8T3D|1|B5|C|495
8T3D|1|B5|G|496
8T3D|1|B5|G|497

Current chains

Chain B5

18S rRNA

Nearby chains