HL_8T3D_092

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

8T3D|1|B5|U|779, 8T3D|1|B5|U|781, 8T3D|1|B5|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3D_092 not in the Motif Atlas

Homologous match to HL_8P9A_207

Geometric discrepancy: 0.4823

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

8T3D|1|B5|C|777
8T3D|1|B5|G|778
8T3D|1|B5|U|779
8T3D|1|B5|A|780
8T3D|1|B5|U|781
8T3D|1|B5|U|782
8T3D|1|B5|G|783

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BY

40S ribosomal protein S24-A