HL_8T3D_093

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUAUUUUGUUGGUUUCUAG

Length

19 nucleotides

Bulged bases

8T3D|1|B5|U|828, 8T3D|1|B5|U|833, 8T3D|1|B5|G|834, 8T3D|1|B5|U|835, 8T3D|1|B5|G|838, 8T3D|1|B5|U|841, 8T3D|1|B5|C|842, 8T3D|1|B5|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3D|1|B5|C|827
8T3D|1|B5|U|828
8T3D|1|B5|A|829
8T3D|1|B5|U|830
8T3D|1|B5|U|831
8T3D|1|B5|U|832
8T3D|1|B5|U|833
8T3D|1|B5|G|834
8T3D|1|B5|U|835
8T3D|1|B5|U|836
8T3D|1|B5|G|837
8T3D|1|B5|G|838
8T3D|1|B5|U|839
8T3D|1|B5|U|840
8T3D|1|B5|U|841
8T3D|1|B5|C|842
8T3D|1|B5|U|843
8T3D|1|B5|A|844
8T3D|1|B5|G|845

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BL

40S ribosomal protein S11-A