HL_8T3D_111

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CAUCGAAAACUCUCCGAACACUAGGUG

Length

27 nucleotides

Bulged bases

8T3D|1|EC|C|6788, 8T3D|1|EC|A|6790, 8T3D|1|EC|A|6792, 8T3D|1|EC|C|6794, 8T3D|1|EC|U|6797, 8T3D|1|EC|C|6798, 8T3D|1|EC|A|6801, 8T3D|1|EC|A|6802, 8T3D|1|EC|C|6803, 8T3D|1|EC|U|6806, 8T3D|1|EC|A|6807, 8T3D|1|EC|G|6808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3D|1|EC|C|6785
8T3D|1|EC|A|6786
8T3D|1|EC|U|6787
8T3D|1|EC|C|6788
8T3D|1|EC|G|6789
8T3D|1|EC|A|6790
8T3D|1|EC|A|6791
8T3D|1|EC|A|6792
8T3D|1|EC|A|6793
8T3D|1|EC|C|6794
8T3D|1|EC|U|6795
8T3D|1|EC|C|6796
8T3D|1|EC|U|6797
8T3D|1|EC|C|6798
8T3D|1|EC|C|6799
8T3D|1|EC|G|6800
8T3D|1|EC|A|6801
8T3D|1|EC|A|6802
8T3D|1|EC|C|6803
8T3D|1|EC|A|6804
8T3D|1|EC|C|6805
8T3D|1|EC|U|6806
8T3D|1|EC|A|6807
8T3D|1|EC|G|6808
8T3D|1|EC|G|6809
8T3D|1|EC|U|6810
8T3D|1|EC|G|6811

Current chains

Chain EC

TSV IRES

Nearby chains

Chain Ao

60S ribosomal protein L42-A