HL_8T3E_050

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GCUUCGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3E_050 not in the Motif Atlas

Homologous match to HL_8C3A_052

Geometric discrepancy: 0.5565

The information below is about HL_8C3A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70228.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8T3E|1|A1|G|2469
8T3E|1|A1|C|2470
8T3E|1|A1|U|2471
8T3E|1|A1|U|2472
8T3E|1|A1|C|2473
8T3E|1|A1|G|2474
8T3E|1|A1|G|2475
8T3E|1|A1|C|2476

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

RPL1A isoform 1