3D structure

PDB id
8T3E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CGUAUUG
Length
7 nucleotides
Bulged bases
8T3E|1|B5|U|779, 8T3E|1|B5|U|781, 8T3E|1|B5|U|782
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T3E_093 not in the Motif Atlas
Homologous match to HL_8P9A_207
Geometric discrepancy: 0.2698
The information below is about HL_8P9A_207
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_48417.5
Basepair signature
cWW-F-F
Number of instances in this motif group
26

Unit IDs

8T3E|1|B5|C|777
8T3E|1|B5|G|778
8T3E|1|B5|U|779
8T3E|1|B5|A|780
8T3E|1|B5|U|781
8T3E|1|B5|U|782
8T3E|1|B5|G|783

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BY
40S ribosomal protein S24-A

Coloring options:


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