HL_8T3E_094

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUAUUUUGUUGGUUUCUAG

Length

19 nucleotides

Bulged bases

8T3E|1|B5|U|828, 8T3E|1|B5|A|829, 8T3E|1|B5|U|830, 8T3E|1|B5|U|831, 8T3E|1|B5|U|832, 8T3E|1|B5|G|834, 8T3E|1|B5|U|840, 8T3E|1|B5|U|841, 8T3E|1|B5|C|842

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3E|1|B5|C|827
8T3E|1|B5|U|828
8T3E|1|B5|A|829
8T3E|1|B5|U|830
8T3E|1|B5|U|831
8T3E|1|B5|U|832
8T3E|1|B5|U|833
8T3E|1|B5|G|834
8T3E|1|B5|U|835
8T3E|1|B5|U|836
8T3E|1|B5|G|837
8T3E|1|B5|G|838
8T3E|1|B5|U|839
8T3E|1|B5|U|840
8T3E|1|B5|U|841
8T3E|1|B5|C|842
8T3E|1|B5|U|843
8T3E|1|B5|A|844
8T3E|1|B5|G|845

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BL

40S ribosomal protein S11-A