HL_8T3E_096

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3E_096 not in the Motif Atlas

Homologous match to HL_8P9A_210

Geometric discrepancy: 0.0815

The information below is about HL_8P9A_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8T3E|1|B5|C|937
8T3E|1|B5|G|938
8T3E|1|B5|A|939
8T3E|1|B5|A|940
8T3E|1|B5|A|941
8T3E|1|B5|G|942

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BN

40S ribosomal protein S13

Chain Ba

RPS26B isoform 1