HL_8T3F_012

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UUGCCUCGGUAA

Length

12 nucleotides

Bulged bases

8T3F|1|A1|C|543, 8T3F|1|A1|C|544, 8T3F|1|A1|U|545, 8T3F|1|A1|C|546, 8T3F|1|A1|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3F|1|A1|U|540
8T3F|1|A1|U|541
8T3F|1|A1|G|542
8T3F|1|A1|C|543
8T3F|1|A1|C|544
8T3F|1|A1|U|545
8T3F|1|A1|C|546
8T3F|1|A1|G|547
8T3F|1|A1|G|548
8T3F|1|A1|U|549
8T3F|1|A1|A|550
8T3F|1|A1|A|551

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AS

60S ribosomal protein L20