HL_8T3F_015
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- UGUAAAA
- Length
- 7 nucleotides
- Bulged bases
- 8T3F|1|A1|U|689, 8T3F|1|A1|A|691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3F_015 not in the Motif Atlas
- Geometric match to HL_5J7L_151
- Geometric discrepancy: 0.2568
- The information below is about HL_5J7L_151
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_80922.2
- Basepair signature
- cWW-tSH-F
- Number of instances in this motif group
- 3
Unit IDs
8T3F|1|A1|U|687
8T3F|1|A1|G|688
8T3F|1|A1|U|689
8T3F|1|A1|A|690
8T3F|1|A1|A|691
8T3F|1|A1|A|692
8T3F|1|A1|A|693
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- RPL4A isoform 1
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain AY
- 60S ribosomal protein L26-A
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