HL_8T3F_034

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

8T3F|1|A1|U|1606, 8T3F|1|A1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T3F_034 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1107

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8T3F|1|A1|G|1599
8T3F|1|A1|U|1600
8T3F|1|A1|U|1601
8T3F|1|A1|A|1602
8T3F|1|A1|A|1603
8T3F|1|A1|G|1604
8T3F|1|A1|A|1605
8T3F|1|A1|U|1606
8T3F|1|A1|U|1607
8T3F|1|A1|C|1608

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AX

60S ribosomal protein L25

Chain Ag

60S ribosomal protein L34-A