HL_8T3F_041
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- UGAACAG
- Length
- 7 nucleotides
- Bulged bases
- 8T3F|1|A1|C|1866
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T3F_041 not in the Motif Atlas
- Homologous match to HL_8P9A_153
- Geometric discrepancy: 0.1105
- The information below is about HL_8P9A_153
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 349
Unit IDs
8T3F|1|A1|U|1862
8T3F|1|A1|G|1863
8T3F|1|A1|A|1864
8T3F|1|A1|A|1865
8T3F|1|A1|C|1866
8T3F|1|A1|A|1867
8T3F|1|A1|G|1868
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
Coloring options: