3D structure

PDB id
8T3F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
Experimental method
ELECTRON MICROSCOPY
Resolution
3.09 Å

Loop

Sequence
UGAACAG
Length
7 nucleotides
Bulged bases
8T3F|1|A1|C|1866
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T3F_041 not in the Motif Atlas
Homologous match to HL_8P9A_153
Geometric discrepancy: 0.1105
The information below is about HL_8P9A_153
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

8T3F|1|A1|U|1862
8T3F|1|A1|G|1863
8T3F|1|A1|A|1864
8T3F|1|A1|A|1865
8T3F|1|A1|C|1866
8T3F|1|A1|A|1867
8T3F|1|A1|G|1868

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AR
60S ribosomal protein L19-A

Coloring options:


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