HL_8T3F_094

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CUAUUUUGUUGGUUUCUAG

Length

19 nucleotides

Bulged bases

8T3F|1|B5|U|828, 8T3F|1|B5|U|833, 8T3F|1|B5|G|834, 8T3F|1|B5|U|835, 8T3F|1|B5|G|838, 8T3F|1|B5|U|839, 8T3F|1|B5|U|841, 8T3F|1|B5|C|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3F|1|B5|C|827
8T3F|1|B5|U|828
8T3F|1|B5|A|829
8T3F|1|B5|U|830
8T3F|1|B5|U|831
8T3F|1|B5|U|832
8T3F|1|B5|U|833
8T3F|1|B5|G|834
8T3F|1|B5|U|835
8T3F|1|B5|U|836
8T3F|1|B5|G|837
8T3F|1|B5|G|838
8T3F|1|B5|U|839
8T3F|1|B5|U|840
8T3F|1|B5|U|841
8T3F|1|B5|C|842
8T3F|1|B5|U|843
8T3F|1|B5|A|844
8T3F|1|B5|G|845

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BL

40S ribosomal protein S11-A