HL_8T3F_114

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UGUACCAUAGGCAGCCCCAAAAACA

Length

25 nucleotides

Bulged bases

8T3F|1|EC|G|6865, 8T3F|1|EC|C|6866, 8T3F|1|EC|A|6873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3F|1|EC|U|6852
8T3F|1|EC|G|6853
8T3F|1|EC|U|6854
8T3F|1|EC|A|6855
8T3F|1|EC|C|6856
8T3F|1|EC|C|6857
8T3F|1|EC|A|6858
8T3F|1|EC|U|6859
8T3F|1|EC|A|6860
8T3F|1|EC|G|6861
8T3F|1|EC|G|6862
8T3F|1|EC|C|6863
8T3F|1|EC|A|6864
8T3F|1|EC|G|6865
8T3F|1|EC|C|6866
8T3F|1|EC|C|6867
8T3F|1|EC|C|6868
8T3F|1|EC|C|6869
8T3F|1|EC|A|6870
8T3F|1|EC|A|6871
8T3F|1|EC|A|6872
8T3F|1|EC|A|6873
8T3F|1|EC|A|6874
8T3F|1|EC|C|6875
8T3F|1|EC|A|6876

Current chains

Chain EC

TSV IRES

Nearby chains

Chain BF

Rps5p

Chain BZ

RPS25A isoform 1