HL_8T4S_012

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T4S_012 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2375

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8T4S|1|2|C|539
8T4S|1|2|U|540
8T4S|1|2|U|541
8T4S|1|2|U|542
8T4S|1|2|C|543
8T4S|1|2|G|544

Current chains

Chain 2

18S rRNA

Nearby chains