HL_8T4S_015

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

8T4S|1|2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T4S_015 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.0939

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8T4S|1|2|U|820
8T4S|1|2|G|821
8T4S|1|2|U|822
8T4S|1|2|U|823
8T4S|1|2|C|824
8T4S|1|2|A|825
8T4S|1|2|A|826
8T4S|1|2|A|827
8T4S|1|2|G|828

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24