HL_8T4S_017

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T4S|1|2|U|885
8T4S|1|2|A|886
8T4S|1|2|U|887
8T4S|1|2|U|888
8T4S|1|2|U|889
8T4S|1|2|U|890
8T4S|1|2|G|891
8T4S|1|2|U|892
8T4S|1|2|U|893
8T4S|1|2|G|894
8T4S|1|2|G|895
8T4S|1|2|U|896
8T4S|1|2|U|897
8T4S|1|2|U|898
8T4S|1|2|U|899
8T4S|1|2|C|900
8T4S|1|2|G|901

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

40S ribosomal protein S11