HL_8T4S_025

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUC

Length

36 nucleotides

Bulged bases

8T4S|1|2|U|1297, 8T4S|1|2|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T4S|1|2|G|1281
8T4S|1|2|A|1282
8T4S|1|2|C|1283
8T4S|1|2|A|1284
8T4S|1|2|G|1285
8T4S|1|2|G|1286
8T4S|1|2|A|1287
8T4S|1|2|U|1288
8T4S|1|2|U|1289
8T4S|1|2|G|1290
8T4S|1|2|A|1291
8T4S|1|2|C|1292
8T4S|1|2|A|1293
8T4S|1|2|G|1294
8T4S|1|2|A|1295
8T4S|1|2|U|1296
8T4S|1|2|U|1297
8T4S|1|2|G|1298
8T4S|1|2|A|1299
8T4S|1|2|U|1300
8T4S|1|2|A|1301
8T4S|1|2|G|1302
8T4S|1|2|C|1303
8T4S|1|2|U|1304
8T4S|1|2|C|1305
8T4S|1|2|U|1306
8T4S|1|2|U|1307
8T4S|1|2|U|1308
8T4S|1|2|C|1309
8T4S|1|2|U|1310
8T4S|1|2|C|1311
8T4S|1|2|G|1312
8T4S|1|2|A|1313
8T4S|1|2|U|1314
8T4S|1|2|U|1315
8T4S|1|2|C|1316

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain M

40S ribosomal protein S12

Chain P

40S ribosomal protein S15

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a