HL_8T5D_021

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

8T5D|1|B|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T5D|1|B|G|543
8T5D|1|B|C|544
8T5D|1|B|U|545
8T5D|1|B|U|546
8T5D|1|B|A|547
8T5D|1|B|G|548
8T5D|1|B|G|549
8T5D|1|B|C|550

Current chains

Chain B

23S RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

Ribosomal protein L21