HL_8T5D_028
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAAAGG
- Length
- 7 nucleotides
- Bulged bases
- 8T5D|1|B|A|781, 8T5D|1|B|G|784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T5D_028 not in the Motif Atlas
- Geometric match to HL_6JQ6_004
- Geometric discrepancy: 0.3449
- The information below is about HL_6JQ6_004
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_34617.5
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 57
Unit IDs
8T5D|1|B|U|779
8T5D|1|B|G|780
8T5D|1|B|A|781
8T5D|1|B|A|782
8T5D|1|B|A|783
8T5D|1|B|G|784
8T5D|1|B|G|785
Current chains
- Chain B
- 23S RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
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