3D structure

PDB id
8T5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGAAAGG
Length
7 nucleotides
Bulged bases
8T5D|1|B|A|781, 8T5D|1|B|G|784
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T5D_028 not in the Motif Atlas
Geometric match to HL_6JQ6_004
Geometric discrepancy: 0.3449
The information below is about HL_6JQ6_004
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

8T5D|1|B|U|779
8T5D|1|B|G|780
8T5D|1|B|A|781
8T5D|1|B|A|782
8T5D|1|B|A|783
8T5D|1|B|G|784
8T5D|1|B|G|785

Current chains

Chain B
23S RNA

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


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