HL_8T5D_035

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUUAUGC

Length

8 nucleotides

Bulged bases

8T5D|1|B|U|1174, 8T5D|1|B|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_035 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3579

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8T5D|1|B|G|1171
8T5D|1|B|C|1172
8T5D|1|B|U|1173
8T5D|1|B|U|1174
8T5D|1|B|A|1175
8T5D|1|B|U|1176
8T5D|1|B|G|1177
8T5D|1|B|C|1178

Current chains

Chain B

23S RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15