HL_8T5D_040

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8T5D|1|B|U|1396, 8T5D|1|B|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_040 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1519

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8T5D|1|B|G|1389
8T5D|1|B|U|1390
8T5D|1|B|U|1391
8T5D|1|B|A|1392
8T5D|1|B|A|1393
8T5D|1|B|U|1394
8T5D|1|B|A|1395
8T5D|1|B|U|1396
8T5D|1|B|U|1397
8T5D|1|B|C|1398

Current chains

Chain B

23S RNA

Nearby chains

Chain T

50S ribosomal protein L23