HL_8T5D_041

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

8T5D|1|B|A|1453, 8T5D|1|B|C|1454, 8T5D|1|B|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_041 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3779

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8T5D|1|B|G|1450
8T5D|1|B|C|1451
8T5D|1|B|G|1452
8T5D|1|B|A|1453
8T5D|1|B|C|1454
8T5D|1|B|G|1455
8T5D|1|B|G|1456
8T5D|1|B|U|1457
8T5D|1|B|U|1458
8T5D|1|B|G|1459
8T5D|1|B|U|1460
8T5D|1|B|C|1461

Current chains

Chain B

23S RNA

Nearby chains

Chain N

50S ribosomal protein L17