HL_8T5D_055

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8T5D|1|B|A|2030, 8T5D|1|B|A|2031, 8T5D|1|B|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_055 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1116

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8T5D|1|B|G|2027
8T5D|1|B|U|2028
8T5D|1|B|G|2029
8T5D|1|B|A|2030
8T5D|1|B|A|2031
8T5D|1|B|G|2032
8T5D|1|B|A|2033
8T5D|1|B|U|2034
8T5D|1|B|G|2035
8T5D|1|B|C|2036

Current chains

Chain B

23S RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain R

Ribosomal protein L21