HL_8T5D_056

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACC

Length

53 nucleotides

Bulged bases

8T5D|1|B|G|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T5D|1|B|G|2123
8T5D|1|B|G|2124
8T5D|1|B|G|2125
8T5D|1|B|A|2126
8T5D|1|B|G|2127
8T5D|1|B|G|2128
8T5D|1|B|C|2129
8T5D|1|B|U|2130
8T5D|1|B|U|2131
8T5D|1|B|U|2132
8T5D|1|B|G|2133
8T5D|1|B|A|2134
8T5D|1|B|A|2135
8T5D|1|B|G|2136
8T5D|1|B|U|2137
8T5D|1|B|G|2138
8T5D|1|B|U|2139
8T5D|1|B|G|2140
8T5D|1|B|G|2141
8T5D|1|B|A|2142
8T5D|1|B|C|2143
8T5D|1|B|G|2144
8T5D|1|B|C|2145
8T5D|1|B|C|2146
8T5D|1|B|A|2147
8T5D|1|B|G|2148
8T5D|1|B|U|2149
8T5D|1|B|C|2150
8T5D|1|B|U|2151
8T5D|1|B|G|2152
8T5D|1|B|C|2153
8T5D|1|B|A|2154
8T5D|1|B|U|2155
8T5D|1|B|G|2156
8T5D|1|B|G|2157
8T5D|1|B|A|2158
8T5D|1|B|G|2159
8T5D|1|B|C|2160
8T5D|1|B|C|2161
8T5D|1|B|G|2162
8T5D|1|B|A|2163
8T5D|1|B|C|2164
8T5D|1|B|C|2165
8T5D|1|B|U|2166
8T5D|1|B|U|2167
8T5D|1|B|G|2168
8T5D|1|B|A|2169
8T5D|1|B|A|2170
8T5D|1|B|A|2171
8T5D|1|B|U|2172
8T5D|1|B|A|2173
8T5D|1|B|C|2174
8T5D|1|B|C|2175

Current chains

Chain B

23S RNA

Nearby chains