HL_8T5D_072

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

8T5D|1|B|A|2799

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_072 not in the Motif Atlas

Homologous match to HL_4WF9_063

Geometric discrepancy: 0.5571

The information below is about HL_4WF9_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T5D|1|B|C|2795
8T5D|1|B|U|2796
8T5D|1|B|U|2797
8T5D|1|B|U|2798
8T5D|1|B|A|2799
8T5D|1|B|A|2800
8T5D|1|B|G|2801

Current chains

Chain B

23S RNA

Nearby chains

Chain J

50S ribosomal protein L13