HL_8T5D_073

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8T5D|1|B|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_073 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0917

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8T5D|1|B|G|2819
8T5D|1|B|A|2820
8T5D|1|B|A|2821
8T5D|1|B|G|2822
8T5D|1|B|A|2823
8T5D|1|B|C|2824
8T5D|1|B|G|2825
8T5D|1|B|A|2826
8T5D|1|B|C|2827

Current chains

Chain B

23S RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17