HL_8T5D_079

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUUCGG

Length

7 nucleotides

Bulged bases

8T5D|1|v|C|210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_079 not in the Motif Atlas

Homologous match to HL_4LFB_005

Geometric discrepancy: 0.5906

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8T5D|1|v|C|206
8T5D|1|v|C|207
8T5D|1|v|U|208
8T5D|1|v|U|209
8T5D|1|v|C|210
8T5D|1|v|G|211
8T5D|1|v|G|212

Current chains

Chain v

16s RNA

Nearby chains