HL_8T5D_086

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T5D_086 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2713

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8T5D|1|v|G|462
8T5D|1|v|U|463
8T5D|1|v|U|464
8T5D|1|v|A|465
8T5D|1|v|A|466
8T5D|1|v|U|467
8T5D|1|v|A|468
8T5D|1|v|C|469
8T5D|1|v|C|470

Current chains

Chain v

16s RNA

Nearby chains