HL_8T5D_106
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 8T5D|1|A|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8T5D_106 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.2462
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8T5D|1|A|A|34
8T5D|1|A|C|35
8T5D|1|A|C|36
8T5D|1|A|C|37
8T5D|1|A|C|38
8T5D|1|A|A|39
8T5D|1|A|U|40
8T5D|1|A|G|41
8T5D|1|A|C|42
8T5D|1|A|C|43
8T5D|1|A|G|44
8T5D|1|A|A|45
8T5D|1|A|A|46
8T5D|1|A|C|47
8T5D|1|A|U|48
Current chains
- Chain A
- 5S RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
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