HL_8T5D_113

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCCGGCC

Length

9 nucleotides

Bulged bases

8T5D|1|v|C|1136, 8T5D|1|v|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T5D|1|v|G|1133
8T5D|1|v|G|1134
8T5D|1|v|U|1135
8T5D|1|v|C|1136
8T5D|1|v|C|1137
8T5D|1|v|G|1138
8T5D|1|v|G|1139
8T5D|1|v|C|1140
8T5D|1|v|C|1141

Current chains

Chain v

16s RNA

Nearby chains

Chain h

30S ribosomal protein S9