HL_8T6S_001

3D structure

PDB id

8T6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 10 bp R-loop

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T6S_001 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.2223

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

8T6S|1|B|A|32
8T6S|1|B|G|33
8T6S|1|B|A|34
8T6S|1|B|A|35
8T6S|1|B|A|36
8T6S|1|B|U|37

Current chains

Chain B

gRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1