HL_8T8B_209

3D structure

PDB id

8T8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8T8B|1|1A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T8B_209 not in the Motif Atlas

Homologous match to HL_9DFE_027

Geometric discrepancy: 0.4525

The information below is about HL_9DFE_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T8B|1|1A|C|1064
8T8B|1|1A|U|1065
8T8B|1|1A|U|1066
8T8B|1|1A|A|1067
8T8B|1|1A|G|1068
8T8B|1|1A|A|1069
8T8B|1|1A|A|1070
8T8B|1|1A|G|1071
8T8B|1|1A|C|1072
8T8B|1|1A|A|1073
8T8B|1|1A|G|1074

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16