3D structure

PDB id
8T8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGUCCACAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T8C_059 not in the Motif Atlas
Homologous match to HL_7RQB_060
Geometric discrepancy: 0.0743
The information below is about HL_7RQB_060
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06192.2
Basepair signature
cWW-tSH-F-F
Number of instances in this motif group
14

Unit IDs

8T8C|1|1A|C|2471
8T8C|1|1A|G|2472
8T8C|1|1A|U|2473
8T8C|1|1A|C|2474
8T8C|1|1A|C|2475
8T8C|1|1A|A|2476
8T8C|1|1A|C|2477
8T8C|1|1A|A|2478
8T8C|1|1A|G|2479

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L36
Chain 1H
50S ribosomal protein L6

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.37 s