HL_8T8C_097

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T8C_097 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.1229

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8T8C|1|1a|C|1165
8T8C|1|1a|G|1166
8T8C|1|1a|A|1168
8T8C|1|1a|A|1169
8T8C|1|1a|A|1170
8T8C|1|1a|G|1171

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1b

30S ribosomal protein S2