HL_8T8C_115

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

8T8C|1|2A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T8C_115 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.057

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8T8C|1|2A|G|382
8T8C|1|2A|U|383
8T8C|1|2A|U|384
8T8C|1|2A|C|385
8T8C|1|2A|G|386
8T8C|1|2A|U|387
8T8C|1|2A|G|388
8T8C|1|2A|G|389
8T8C|1|2A|A|390
8T8C|1|2A|G|391
8T8C|1|2A|C|392

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15