HL_8T8C_116

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

8T8C|1|2A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8T8C_116 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.0716

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

8T8C|1|2A|G|410
8T8C|1|2A|G|411
8T8C|1|2A|A|412
8T8C|1|2A|C|413
8T8C|1|2A|C|414
8T8C|1|2A|A|415
8T8C|1|2A|C|416
8T8C|1|2A|C|417

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2P

50S ribosomal protein L15