HL_8T8C_132

3D structure

PDB id

8T8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCUUAGAAGCAGC

Length

13 nucleotides

Bulged bases

8T8C|1|2A|G|1068, 8T8C|1|2A|A|1070, 8T8C|1|2A|G|1071, 8T8C|1|2A|C|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T8C|1|2A|G|1063
8T8C|1|2A|C|1064
8T8C|1|2A|U|1065
8T8C|1|2A|U|1066
8T8C|1|2A|A|1067
8T8C|1|2A|G|1068
8T8C|1|2A|A|1069
8T8C|1|2A|A|1070
8T8C|1|2A|G|1071
8T8C|1|2A|C|1072
8T8C|1|2A|A|1073
8T8C|1|2A|G|1074
8T8C|1|2A|C|1075

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25