3D structure

PDB id
8T8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGACACAG
Length
8 nucleotides
Bulged bases
8T8C|1|2A|A|1614, 8T8C|1|2A|A|1616, 8T8C|1|2A|A|1618
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8T8C_143 not in the Motif Atlas
Homologous match to HL_7RQB_040
Geometric discrepancy: 0.0531
The information below is about HL_7RQB_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64430.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
13

Unit IDs

8T8C|1|2A|C|1612
8T8C|1|2A|G|1613
8T8C|1|2A|A|1614
8T8C|1|2A|C|1615
8T8C|1|2A|A|1616
8T8C|1|2A|C|1617
8T8C|1|2A|A|1618
8T8C|1|2A|G|1619

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 27
50S ribosomal protein L34
Chain 2W
50S ribosomal protein L22

Coloring options:


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