HL_8TOZ_003

3D structure

PDB id

8TOZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Class III PreQ1 riboswitch double mutant U8C/A85G

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUGGCGGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8TOZ_003 not in the Motif Atlas

Geometric match to HL_5TBW_009

Geometric discrepancy: 0.2976

The information below is about HL_5TBW_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_15076.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8TOZ|1|A|G|63
8TOZ|1|A|C|64
8TOZ|1|A|U|65
8TOZ|1|A|G|66
8TOZ|1|A|G|67
8TOZ|1|A|C|68
8TOZ|1|A|G|69
8TOZ|1|A|G|70
8TOZ|1|A|U|71
8TOZ|1|A|C|72

Current chains

Chain A

Class-III preQ1 riboswitch

Nearby chains